Picture of the month:
Vegetal view of a reconstructed 128-cell Ciona gastrula. Muscle and mesenchyme are in red, endoderm in blue, notochord in orange, TLC in green, and A-line neural cells in yellow.
Image communicated by F. Robin and P. Lemaire.
(Don't hesitate to send us your own pictures with a short description !)
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| ANISEED news |
| 09/04/2009 |
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ANISEED BIG GAME!!!!!!
Heard of Easter egg hunts
Results: nobody found the 15 eggs.
The three first will receive a big chocolate egg in Okinawa Tunicate meeting:
- 12 eggs: Florian Razy
- 10 eggs: Shota Chiba
- 9 eggs: Stacie Whitaker and Sebastien Darras
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09/03/2009
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New: Full ORF Gateway-compatible clones and KH transcript models are now accessible from the Aniseed website, in addition to their representation in the Aniseed Genome browser.
How access these information?
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| 16/07/2008 |
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New: You can visualize all wild type insitu expression pictures for a given gene by clicking on the "Expression at a glance" tab in the gene cards.Example
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| 08/02/2008 |
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New: New Article Card search interfaces are available. You can search by Gene analyzed or by Territories affected
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| 10/01/2008 |
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Update: User friendly In Situ search interfaces are now online on Aniseed. (Bugs fixed 14/01/08)
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| 23/10/2007 |
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New: A new Molecular Tool interface is now available on the website accessible from the Gene Card page or from Article Card page. You can also search for any molecular tool by using this page
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| 23/10/2007 |
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New: A new Article Card interface is now available on the website which pools all Aniseed Data related to a given article.
Show all articles present in the database
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| 05/09/2007 |
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PATCH: Following a server migration, the 3D Virtual Embryo has to be patched to connect to the database. Explanations and Download are here
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ANISEED version 3:
A model organism database for Ciona intestinalis, Ciona savignyi, Halocynthia roretzi and Phallusia mammillata
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Welcome to ANISEED version 3!
Aniseed is a database designed to offer a representation of ascidian embryonic development at the level of the genome (cis-regulatory sequences, gene
expression, protein annotation), of the cell (morphology, fate, induction, lineage) or of the whole embryo
(anatomy, morphogenesis). Currently, four organism models are described in Aniseed: Ciona intestinalis, Ciona savignyi, Halocynthia roretzi and Phallusia mammillata.
This version supports three sets of Ciona intestinalis transcript models: JGI v1.0, KyotoGrail 2005 and ENSEMBL, all functionally annotated, and grouped into Aniseedv3.0 gene models. You can explore their expression profiles during normal or manipulated development, access their regulatory regions, or get the molecular tools used to assay their functions. You can also explore the anatomy and embryology of ascidians. For more details about what has changed since version 2, please refer to the release notes. The archived ANISEED v2.0 can still be accessed here.
Have fun and as usual, please send us feed back on this new version at aniseed@ibdm.univ-mrs.fr
The aniseed team
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If you don't know where to start ... Use anisearch to perform a keyword search on the whole database except cDNA clones, which can be accessed via the "genes/clones" menu at the top of the page.
eg. "otx" retrieves all data associated to otx. You can also combine words for example "otx 32 cell a6.5" will retrieve all in situs for otx at the 32 cell stage showing staining in the a6.5 blastomere.
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Aniseed V2.0 - Archive
Aniseed in its previous version is still available by clicking Aniseed V2.0
Virtual embryo
The 3D Virtual embryo is available to download in the download section of the website.
It's well supported on the majority of platform (MacOS, Windows, Linux).
Download
All the data present in our website are now freely downloadable (Insitu data, clones, anatomical ontologies, ...) Visit our download page for more informations.
Tutorials
Many tutorials (text and movies) are online and may be useful ...
MISFISHIE Exchange Format
In Situs Exchange Format used by ANISEED.
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